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BIOL-6420: Molecular Modeling
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< meta property = "og:description" content = "This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550 , BIOL 6420, BCBP 4550 , and BCBP 6420  meet jointly; only one of these courses can be taken for credit." >
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Molecular Modeling
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BIOL-6420
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This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550 , BIOL 6420, BCBP 4550 , and BCBP 6420  meet jointly; only one of these courses can be taken for credit.
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4 credits
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Cross-listed with:
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< a class = "course-pill" href = "BCBP-4550.html" > BCBP-4550 Molecular Modeling< / a >
< a class = "course-pill" href = "BCBP-6420.html" > BCBP-6420 Molecular Modeling< / a >
< a class = "course-pill" href = "BIOL-4550.html" > BIOL-4550 Molecular Modeling< / a >
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Prereqs:
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< a class = "course-pill" href = "MATH-1020.html" > MATH-1020 Calculus II< / a >
< div class = "pr-and" > and< / div >
< a class = "course-pill" href = "BIOL-4620.html" > BIOL-4620 Molecular Biology< / a >
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one of:
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< a class = "course-pill" href = "BIOL-4760.html" > BIOL-4760 Molecular Biochemistry I< / a >
< a class = "course-pill" href = "BCBP-4760.html" > BCBP-4760 Molecular Biochemistry I< / a >
< a class = "course-pill" href = "CHEM-4760.html" > CHEM-4760 Molecular Biochemistry I< / a >
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Offered
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< th class = "spring season-label" > Spring< / th >
< th class = "summer season-label" colspan = "2" > Summer< / th >
< th class = "fall season-label" > Fall< / th >
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< th colspan = "2" > < / th >
< th class = "summer2 midsum-label" > (Session 1)< / th >
< th class = "summer3 midsum-label" > (Session 2)< / th >
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< th class = "year" > 2023< / th >
< td class = "term spring offered" >
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Molecular Modeling (4c)
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< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2022< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/30
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< / td >
< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2021< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 3/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2020< / th >
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< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
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< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2019< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 3/30
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< / div >
< / td >
< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2018< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2017< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2016< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/30
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2015< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 4/30
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2014< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Molecular Modeling (4c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/30
< / span >
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2013< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics II (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/20
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< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
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< th class = "year" > 2012< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics II (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/20
< / span >
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< / td >
< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< th class = "year" > 2011< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics II (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/20
< / span >
< / div >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
< / td >
< / tr >
< tr >
< th class = "year" > 2010< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinfo II:molecular Modeling (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/20
< / span >
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< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2009< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinfo II:molecular Modeling (3c)
< / span >
< ul class = "prof-list" >
< li > Jane F Koretz< / li >
< li > Chunyu Wang< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/20
< / span >
< / div >
< / td >
< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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< tr >
< th class = "year" > 2008< / th >
< td class = "term spring offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinfo II:molecular Modeling (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/20
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< td colspan = "2" class = "term summer not-offered" >
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< td class = "term fall not-offered" >
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