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BIOL-6410: Sequence Analysis
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< meta property = "og:description" content = "This course covers the theory and practice of biological sequence analysis, including algorithms for pairwise sequence alignment, multiple sequence alignment, phylogenetic analysis, and database searching. Concepts covered include homology, sequence similarity, parsimony, mechanisms and metrics of molecular evolution, biological data bases, database search algorithms (BLAST), and statistical significance. Selected topics include hidden Markov models, bootstrap analysis, and gene finding. Modern sequence analysis software will be provided. Laptop computers are required. Knowledge of a programming language is strongly suggested. Meets jointly with BIOL 4540 ; both cannot be taken for credit." >
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Sequence Analysis
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BIOL-6410
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This course covers the theory and practice of biological sequence analysis, including algorithms for pairwise sequence alignment, multiple sequence alignment, phylogenetic analysis, and database searching. Concepts covered include homology, sequence similarity, parsimony, mechanisms and metrics of molecular evolution, biological data bases, database search algorithms (BLAST), and statistical significance. Selected topics include hidden Markov models, bootstrap analysis, and gene finding. Modern sequence analysis software will be provided. Laptop computers are required. Knowledge of a programming language is strongly suggested. Meets jointly with BIOL 4540 ; both cannot be taken for credit.
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4 credits
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Prereqs:
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none
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Past Term Data
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Offered
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Not Offered
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Offered as Cross-Listing Only
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No Term Data
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Simple View
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Detailed View
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< table id = "years-table" >
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< thead >
< tr >
< th > < / th >
< th class = "spring season-label" > Spring< / th >
< th class = "summer season-label" colspan = "2" > Summer< / th >
< th class = "fall season-label" > Fall< / th >
< / tr >
< tr >
< th colspan = "2" > < / th >
< th class = "summer2 midsum-label" > (Session 1)< / th >
< th class = "summer3 midsum-label" > (Session 2)< / th >
< th > < / th >
< / tr >
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< th class = "year" > 2023< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Keith Fraser< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/10
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< / td >
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< tr >
< th class = "year" > 2022< / th >
< td class = "term spring not-offered" >
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Keith Fraser< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 2/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2021< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Keith Fraser< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 5/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2020< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Keith Fraser< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 6/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2019< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Keith Fraser< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2018< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2017< / th >
< td class = "term spring not-offered" >
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2016< / th >
< td class = "term spring not-offered" >
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 0/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2015< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (4c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/5
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2014< / th >
< td class = "term spring not-offered" >
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< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
< / td >
< / tr >
< tr >
< th class = "year" > 2013< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Sequence Analysis (3c)
< / span >
< ul class = "prof-list" >
< li > Randall Vincent Collura< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2012< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics I (3c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2011< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics I (3c)
< / span >
< ul class = "prof-list" >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2010< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinformatics I (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 1/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2009< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinfo I: Sequence Analysis (3c)
< / span >
< ul class = "prof-list" >
< li > Chunyu Wang< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 6/10
< / span >
< / div >
< / td >
< / tr >
< tr >
< th class = "year" > 2008< / th >
< td class = "term spring not-offered" >
< / td >
< td colspan = "2" class = "term summer not-offered" >
< / td >
< td class = "term fall not-offered" >
< / td >
< / tr >
< tr >
< th class = "year" > 2007< / th >
< td class = "term spring unscheduled" >
< / td >
< td colspan = "2" class = "term summer unscheduled" >
< / td >
< td class = "term fall offered" >
< div class = "view-container detail-view-container" >
< span class = "term-course-info" >
Bioinfo I: Sequence Analysis (3c)
< / span >
< ul class = "prof-list" >
< li > Michael Zuker< / li >
< li > Christopher Bystroff< / li >
< / ul >
< span class = "course-capacity" >
Seats Taken: 9/15
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