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582 lines
24 KiB
HTML
<!DOCTYPE html>
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<title>
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BIOL-6410: Sequence Analysis
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</title>
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<meta property="og:title" content="BIOL-6410: Sequence Analysis">
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<meta property="og:description" content="This course covers the theory and practice of biological sequence analysis, including algorithms for pairwise sequence alignment, multiple sequence alignment, phylogenetic analysis, and database searching. Concepts covered include homology, sequence similarity, parsimony, mechanisms and metrics of molecular evolution, biological data bases, database search algorithms (BLAST), and statistical significance. Selected topics include hidden Markov models, bootstrap analysis, and gene finding. Modern sequence analysis software will be provided. Laptop computers are required. Knowledge of a programming language is strongly suggested. Meets jointly with BIOL 4540.">
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<body class="search_plugin_added">
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<input type="text" id="search" class="header-search" placeholder="Search...">
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</form>
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</div>
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<div id="cd-flex">
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<div id="course-info-container">
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<h1 id="name">
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Sequence Analysis
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</h1>
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<h2 id="code">
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BIOL-6410
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</h2>
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<p>
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This course covers the theory and practice of biological sequence analysis, including algorithms for pairwise sequence alignment, multiple sequence alignment, phylogenetic analysis, and database searching. Concepts covered include homology, sequence similarity, parsimony, mechanisms and metrics of molecular evolution, biological data bases, database search algorithms (BLAST), and statistical significance. Selected topics include hidden Markov models, bootstrap analysis, and gene finding. Modern sequence analysis software will be provided. Laptop computers are required. Knowledge of a programming language is strongly suggested. Meets jointly with BIOL 4540.
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</p>
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<div id="cattrs-container">
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<span id="credits-pill" class="attr-pill">
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4 credits
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</span>
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</div>
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<div id="crosslist-container">
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<div id="crosslist-title" class="rel-info-title">
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Cross-listed with:
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</div>
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<div id=crosslist-classes" class="rel-info-courses">
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<a class="course-pill" href="BIOL-4540">BIOL-4540 Sequence Analysis</a>
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</div>
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</div>
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<div id="prereq-container" class="rel-info-container">
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<div id="prereq-title" class="rel-info-title">
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Prereqs:
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</div>
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<div id="prereq-classes" class="rel-info-courses">
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<a class="course-pill" href="MATH-1020">MATH-1020 Calculus II</a>
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<div class="pr-and">and</div>
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<a class="course-pill" href="BIOL-4620">BIOL-4620 Molecular Biology</a>
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<div class="pr-and">and</div>
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<a class="course-pill" href="CSCI-1200">CSCI-1200 Data Structures</a>
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</div>
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</div>
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</div>
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<div id="past-container">
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<h1 id="past-title">
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Past Term Data
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</h2>
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<input type="radio" id="simple-view-input" name="view-select" value="simple" checked="checked">
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<div id="yes-code" class="key-code">
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<span class="code-icon" id="yes-code-icon">
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<svg><use href="../icons.svg#circle-check"></use></svg>
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</span>
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Offered
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<svg><use href="../icons.svg#circle-no"></use></svg>
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Not Offered
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<svg><use href="../icons.svg#circle-question"></use></svg>
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Offered as Cross-Listing Only
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<div id="nil-code" class="key-code">
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<span class="code-icon" id="nil-code-icon">
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<svg><use href="../icons.svg#circle-empty"></use></svg>
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No Term Data
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</div>
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<div id="control-panel">
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<label for="simple-view-input" id="simple-view-label" class="view-option-label">
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<span class="view-icon" id="simple-view-icon">
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<span class="view-icon-selected"><svg><use href="../icons.svg#circle-dot"></use></svg></span>
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</span>
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Simple View
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</label>
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<label for="detail-view-input" id="detail-view-label" class="view-option-label">
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<span class="view-icon-selected"><svg><use href="../icons.svg#circle-dot"></use></svg></span>
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Detailed View
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</label>
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</div>
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</div>
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<table id="years-table">
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<thead>
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<tr>
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<th></th>
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<th class="spring season-label">Spring</th>
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<th class="summer season-label" colspan="2">Summer</th>
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<th class="fall season-label">Fall</th>
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</tr>
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<tr>
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<th colspan="2"></th>
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<th class="summer2 midsum-label">(Session 1)</th>
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<th class="summer3 midsum-label">(Session 2)</th>
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<th></th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<th class="year">2024</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer unscheduled">
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</td>
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<td class="term fall unscheduled">
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</td>
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</tr>
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<tr>
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<th class="year">2023</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202309&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Keith Fraser</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 4/10
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2022</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202209&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Keith Fraser</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 2/10
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2021</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202109&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Keith Fraser</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 5/10
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2020</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202009&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Keith Fraser</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 6/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2019</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201909&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Keith Fraser</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 1/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2018</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201809&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 0/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2017</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201709&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
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|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
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</ul>
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|
<span class="course-capacity">
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|
Seats Taken: 0/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2016</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
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<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201609&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 0/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2015</th>
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<td class="term spring not-offered">
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</td>
|
|
<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201509&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
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|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 1/5
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</span>
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</div>
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</td>
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</tr>
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<tr>
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<th class="year">2014</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall offered-diff-code">
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</td>
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</tr>
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<tr>
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<th class="year">2013</th>
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<td class="term spring not-offered">
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</td>
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<td colspan="2" class="term summer not-offered">
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|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201309&subj_in=BIOL&crse_in=6410&schd_in=">Sequence Analysis (3c)</a>
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|
</span>
|
|
<ul class="prof-list">
|
|
<li>Randall Vincent Collura</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 1/10
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|
</span>
|
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</div>
|
|
</td>
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</tr>
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<tr>
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<th class="year">2012</th>
|
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<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201209&subj_in=BIOL&crse_in=6410&schd_in=">Bioinformatics I (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 1/10
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2011</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201109&subj_in=BIOL&crse_in=6410&schd_in=">Bioinformatics I (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 1/10
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2010</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201009&subj_in=BIOL&crse_in=6410&schd_in=">Bioinformatics I (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 1/10
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2009</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
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<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200909&subj_in=BIOL&crse_in=6410&schd_in=">Bioinfo I: Sequence Analysis (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 6/10
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|
</span>
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|
</div>
|
|
</td>
|
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</tr>
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|
<tr>
|
|
<th class="year">2008</th>
|
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<td class="term spring not-offered">
|
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</td>
|
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<td colspan="2" class="term summer not-offered">
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|
</td>
|
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<td class="term fall not-offered">
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</td>
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</tr>
|
|
<tr>
|
|
<th class="year">2007</th>
|
|
<td class="term spring not-offered">
|
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</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200709&subj_in=BIOL&crse_in=6410&schd_in=">Bioinfo I: Sequence Analysis (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Michael Zuker</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 9/15
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2006</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200609&subj_in=BIOL&crse_in=6410&schd_in=">Bioinfo I: Sequence Analysis (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>John C. Salerno</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 3/15
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2005</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200509&subj_in=BIOL&crse_in=6410&schd_in=">Bioinfo I: Sequence Analysis (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 2/15
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2004</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200409&subj_in=BIOL&crse_in=6410&schd_in=">Bioinfo I: Sequence Analysis (3c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 5/15
|
|
</span>
|
|
</div>
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2003</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2002</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2001</th>
|
|
<td class="term spring offered-diff-code">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2000</th>
|
|
<td class="term spring offered-diff-code">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">1999</th>
|
|
<td class="term spring offered-diff-code">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">1998</th>
|
|
<td class="term spring unscheduled">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall offered-diff-code">
|
|
</td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</body>
|
|
</html>
|