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665 lines
28 KiB
HTML
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BIOL-4550: Molecular Modeling
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</title>
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<meta property="og:title" content="BIOL-4550: Molecular Modeling">
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<meta property="og:description" content="This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550, BIOL 6420, BCBP 4550, and BCBP 6420 meet jointly.">
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<input type="text" id="search" class="header-search" placeholder="Search...">
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</form>
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</div>
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<div id="cd-flex">
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<div id="course-info-container">
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<h1 id="name">
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Molecular Modeling
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</h1>
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<h2 id="code">
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BIOL-4550
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</h2>
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<p>
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This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550, BIOL 6420, BCBP 4550, and BCBP 6420 meet jointly.
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</p>
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<div id="cattrs-container">
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<span id="credits-pill" class="attr-pill">
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4 credits
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</span>
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</div>
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<div id="crosslist-container">
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<div id="crosslist-title" class="rel-info-title">
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Cross-listed with:
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</div>
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<div id=crosslist-classes" class="rel-info-courses">
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<a class="course-pill" href="BCBP-4550">BCBP-4550 Molecular Modeling</a>
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<a class="course-pill" href="BCBP-6420">BCBP-6420 Molecular Modeling</a>
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<a class="course-pill" href="BIOL-6420">BIOL-6420 Molecular Modeling</a>
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</div>
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</div>
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<div id="prereq-container" class="rel-info-container">
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<div id="prereq-title" class="rel-info-title">
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Prereqs:
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</div>
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<div id="prereq-classes" class="rel-info-courses">
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<a class="course-pill" href="BIOL-4620">BIOL-4620 Molecular Biology</a>
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<div class="pr-and">and</div>
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<a class="course-pill" href="MATH-1020">MATH-1020 Calculus II</a>
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<div class="pr-and">and</div>
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<div class="pr-or-con">
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<div class="pr-or-title">
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one of:
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</div>
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<div class="pr-or">
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<a class="course-pill" href="BIOL-4760">BIOL-4760 Molecular Biochemistry I</a>
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<a class="course-pill" href="BCBP-4760">BCBP-4760 Molecular Biochemistry I</a>
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<a class="course-pill" href="CHEM-4760">CHEM-4760 Molecular Biochemistry I</a>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="past-container">
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<h1 id="past-title">
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Past Term Data
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</h2>
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<input type="radio" id="simple-view-input" name="view-select" value="simple" checked="checked">
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<svg><use href="../icons.svg#circle-check"></use></svg>
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</span>
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Offered
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<div id="no-code" class="key-code">
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<svg><use href="../icons.svg#circle-no"></use></svg>
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Not Offered
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<div id="diff-code" class="key-code">
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<span class="code-icon" id="diff-code-icon">
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<svg><use href="../icons.svg#circle-question"></use></svg>
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</span>
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Offered as Cross-Listing Only
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No Term Data
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<div id="control-panel">
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<label for="simple-view-input" id="simple-view-label" class="view-option-label">
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</span>
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Simple View
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</label>
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<label for="detail-view-input" id="detail-view-label" class="view-option-label">
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Detailed View
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</label>
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</div>
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</div>
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<table id="years-table">
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<thead>
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<tr>
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<th></th>
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<th class="spring season-label">Spring</th>
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<th class="summer season-label" colspan="2">Summer</th>
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<th class="fall season-label">Fall</th>
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</tr>
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<tr>
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<th colspan="2"></th>
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<th class="summer2 midsum-label">(Session 1)</th>
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<th class="summer3 midsum-label">(Session 2)</th>
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<th></th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<th class="year">2024</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202401&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 4/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2023</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202301&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 4/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2022</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202201&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 5/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2021</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202101&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 8/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2020</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202001&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 6/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2019</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201901&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 7/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2018</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201801&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 2/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2017</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201701&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 12/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2016</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201601&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 7/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2015</th>
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<td class="term spring offered">
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|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
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|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201501&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
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|
<span class="course-capacity">
|
|
Seats Taken: 12/30
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</span>
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|
</div>
|
|
</td>
|
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<td colspan="2" class="term summer not-offered">
|
|
</td>
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<td class="term fall not-offered">
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|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2014</th>
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<td class="term spring offered">
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|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201401&subj_in=BIOL&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
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|
<span class="course-capacity">
|
|
Seats Taken: 4/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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|
</td>
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|
</tr>
|
|
<tr>
|
|
<th class="year">2013</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201301&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
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</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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|
<span class="course-capacity">
|
|
Seats Taken: 10/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
|
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<th class="year">2012</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201201&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
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</span>
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|
<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 7/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2011</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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|
<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201101&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
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|
</span>
|
|
<ul class="prof-list">
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|
<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 8/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
|
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<th class="year">2010</th>
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|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201001&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 7/30
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2009</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200901&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Jane F Koretz</li>
|
|
<li>Chunyu Wang</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 9/30
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2008</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200801&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Chunyu Wang</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 8/30
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2007</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200701&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Angel Enrique Garcia</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 14/30
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2006</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200601&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Susan M Smith</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 11/30
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2005</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200501&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Susan M Smith</li>
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 9/20
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2004</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200401&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Christopher Bystroff</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 11/20
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2003</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200301&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Susan M Smith</li>
|
|
<li>Christopher Bystroff</li>
|
|
<li>John C. Salerno</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 12/20
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2002</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2001</th>
|
|
<td class="term spring offered">
|
|
<div class="view-container detail-view-container">
|
|
<span class="term-course-info">
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=200101&subj_in=BIOL&crse_in=4550&schd_in=">Bioinformatics II (4c)</a>
|
|
</span>
|
|
<ul class="prof-list">
|
|
<li>Susan M Smith</li>
|
|
<li>Christopher Bystroff</li>
|
|
<li>John C. Salerno</li>
|
|
</ul>
|
|
<span class="course-capacity">
|
|
Seats Taken: 3/10
|
|
</span>
|
|
</div>
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">2000</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">1999</th>
|
|
<td class="term spring not-offered">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
<tr>
|
|
<th class="year">1998</th>
|
|
<td class="term spring unscheduled">
|
|
</td>
|
|
<td colspan="2" class="term summer not-offered">
|
|
</td>
|
|
<td class="term fall not-offered">
|
|
</td>
|
|
</tr>
|
|
</tbody>
|
|
</table>
|
|
</div>
|
|
</div>
|
|
</body>
|
|
</html>
|