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522 lines
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HTML
522 lines
21 KiB
HTML
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<!DOCTYPE html>
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<html>
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<head>
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<title>
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BCBP-4550: Molecular Modeling
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</title>
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<meta property="og:title" content="BCBP-4550: Molecular Modeling">
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<meta property="og:description" content="This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550, BIOL 6420, BCBP 4550, and BCBP 6420 meet jointly; only one of these courses can be taken for credit.">
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<link rel="stylesheet" href="../css/common.css">
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<link rel="stylesheet" href="../css/coursedisplay.css">
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<link rel="manifest" href="../favicon/site.webmanifest">
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<script src="../js/fuse.js"></script>
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<script src="../js/search_helper.js"></script>
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</head>
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<body class="search_plugin_added">
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<div id="qlog-header">
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<a id="qlog-wordmark" href="../"><svg><use href="../images/quatalogHWordmark.svg#QuatalogHWordmark"></use></svg></a>
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<form onsubmit="search_helper(event)">
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<input type="text" id="search" class="header-search" placeholder="Search...">
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</form>
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</div>
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<div id="cd-flex">
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<div id="course-info-container">
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<h1 id="name">
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Molecular Modeling
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</h1>
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<h2 id="code">
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BCBP-4550
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</h2>
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<p>
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This course covers the theory and practice of the structural modeling of proteins and other biomolecules using informatics-driven and energy-based approaches. Topics include template-based comparative modeling, secondary structure prediction, tertiary structure prediction, protein classification, sidechain rotamers, docking, protein design, energy minimization, electrostatics, molecular dynamics, and molecular surfaces. Molecular modeling software will be provided. Laptop computers are required. BIOL 4550, BIOL 6420, BCBP 4550, and BCBP 6420 meet jointly; only one of these courses can be taken for credit.
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</p>
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<div id="cattrs-container">
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<span id="credits-pill" class="attr-pill">
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4 credits
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</span>
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</div>
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<div id="crosslist-container">
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<div id="crosslist-title" class="rel-info-title">
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Cross-listed with:
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</div>
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<div id=crosslist-classes" class="rel-info-courses">
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<a class="course-pill" href="BCBP-6420">BCBP-6420 Molecular Modeling</a>
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<a class="course-pill" href="BIOL-4550">BIOL-4550 Molecular Modeling</a>
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<a class="course-pill" href="BIOL-6420">BIOL-6420 Molecular Modeling</a>
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</div>
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</div>
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<div id="prereq-container" class="rel-info-container">
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<div id="prereq-title" class="rel-info-title">
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Prereqs:
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</div>
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<div id="prereq-classes" class="rel-info-courses">
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<a class="course-pill" href="MATH-1020">MATH-1020 Calculus II</a>
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<div class="pr-and">and</div>
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<a class="course-pill" href="BIOL-4620">BIOL-4620 Molecular Biology</a>
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<div class="pr-and">and</div>
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<div class="pr-or-con">
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<div class="pr-or-title">
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one of:
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</div>
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<div class="pr-or">
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<a class="course-pill" href="BIOL-4760">BIOL-4760 Molecular Biochemistry I</a>
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<a class="course-pill" href="CHEM-4760">CHEM-4760 Molecular Biochemistry I</a>
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<a class="course-pill" href="BCBP-4760">BCBP-4760 Molecular Biochemistry I</a>
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</div>
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</div>
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</div>
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</div>
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</div>
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<div id="past-container">
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<h1 id="past-title">
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Past Term Data
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</h2>
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<input type="radio" id="simple-view-input" name="view-select" value="simple" checked="checked">
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<input type="radio" id="detail-view-input" name="view-select" value="detailed">
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<div id="opt-container">
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<div id="key-panel">
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<div id="yes-code" class="key-code">
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<span class="code-icon" id="yes-code-icon">
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<svg><use href="../icons.svg#circle-check"></use></svg>
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</span>
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Offered
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</div>
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<div id="no-code" class="key-code">
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<span class="code-icon" id="no-code-icon">
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<svg><use href="../icons.svg#circle-no"></use></svg>
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</span>
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Not Offered
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</div>
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<div id="diff-code" class="key-code">
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<span class="code-icon" id="diff-code-icon">
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<svg><use href="../icons.svg#circle-question"></use></svg>
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</span>
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Offered as Cross-Listing Only
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</div>
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<div id="nil-code" class="key-code">
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<span class="code-icon" id="nil-code-icon">
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<svg><use href="../icons.svg#circle-empty"></use></svg>
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</span>
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No Term Data
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</div>
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</div>
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<div id="control-panel">
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<label for="simple-view-input" id="simple-view-label" class="view-option-label">
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<span class="view-icon" id="simple-view-icon">
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<span class="view-icon-selected"><svg><use href="../icons.svg#circle-dot"></use></svg></span>
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<span class="view-icon-unselected"><svg><use href="../icons.svg#circle-empty"></use></svg></span>
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</span>
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Simple View
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</label>
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<label for="detail-view-input" id="detail-view-label" class="view-option-label">
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<span class="view-icon" id="detail-view-icon">
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<span class="view-icon-selected"><svg><use href="../icons.svg#circle-dot"></use></svg></span>
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<span class="view-icon-unselected"><svg><use href="../icons.svg#circle-empty"></use></svg></span>
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</span>
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Detailed View
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</label>
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</div>
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</div>
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<table id="years-table">
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<thead>
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<tr>
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<th></th>
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<th class="spring season-label">Spring</th>
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<th class="summer season-label" colspan="2">Summer</th>
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<th class="fall season-label">Fall</th>
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</tr>
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<tr>
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<th colspan="2"></th>
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<th class="summer2 midsum-label">(Session 1)</th>
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<th class="summer3 midsum-label">(Session 2)</th>
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<th></th>
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</tr>
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</thead>
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<tbody>
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<tr>
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<th class="year">2024</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202401&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 4/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2023</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202301&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 7/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2022</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202201&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 12/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2021</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202101&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Chunyu Wang</li>
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<li>Christopher Bystroff</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 5/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2020</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=202001&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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</ul>
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<span class="course-capacity">
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Seats Taken: 8/30
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</span>
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</div>
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</td>
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<td colspan="2" class="term summer not-offered">
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</td>
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<td class="term fall not-offered">
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</td>
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</tr>
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<tr>
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<th class="year">2019</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201901&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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</span>
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<ul class="prof-list">
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<li>Christopher Bystroff</li>
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<li>Chunyu Wang</li>
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||
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</ul>
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|
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<span class="course-capacity">
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||
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Seats Taken: 11/30
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</span>
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||
|
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</div>
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||
|
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</td>
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||
|
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<td colspan="2" class="term summer not-offered">
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||
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</td>
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||
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<td class="term fall not-offered">
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||
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</td>
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||
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</tr>
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<tr>
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||
|
|
<th class="year">2018</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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||
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<span class="term-course-info">
|
||
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201801&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
|
||
|
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</span>
|
||
|
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<ul class="prof-list">
|
||
|
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<li>Christopher Bystroff</li>
|
||
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<li>Chunyu Wang</li>
|
||
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</ul>
|
||
|
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<span class="course-capacity">
|
||
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Seats Taken: 7/30
|
||
|
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</span>
|
||
|
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</div>
|
||
|
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</td>
|
||
|
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<td colspan="2" class="term summer not-offered">
|
||
|
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</td>
|
||
|
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<td class="term fall not-offered">
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||
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</td>
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||
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</tr>
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||
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<tr>
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||
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<th class="year">2017</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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<span class="term-course-info">
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||
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201701&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
|
||
|
|
</span>
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||
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<ul class="prof-list">
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||
|
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<li>Christopher Bystroff</li>
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||
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<li>Chunyu Wang</li>
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||
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</ul>
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||
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<span class="course-capacity">
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||
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Seats Taken: 2/30
|
||
|
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</span>
|
||
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</div>
|
||
|
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</td>
|
||
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<td colspan="2" class="term summer not-offered">
|
||
|
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</td>
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||
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<td class="term fall not-offered">
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||
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</td>
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||
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</tr>
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<tr>
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||
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<th class="year">2016</th>
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<td class="term spring offered">
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<div class="view-container detail-view-container">
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||
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<span class="term-course-info">
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||
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|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201601&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
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||
|
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</span>
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||
|
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<ul class="prof-list">
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||
|
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<li>Chunyu Wang</li>
|
||
|
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</ul>
|
||
|
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<span class="course-capacity">
|
||
|
|
Seats Taken: 3/30
|
||
|
|
</span>
|
||
|
|
</div>
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2015</th>
|
||
|
|
<td class="term spring offered">
|
||
|
|
<div class="view-container detail-view-container">
|
||
|
|
<span class="term-course-info">
|
||
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201501&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
|
||
|
|
</span>
|
||
|
|
<ul class="prof-list">
|
||
|
|
<li>Chunyu Wang</li>
|
||
|
|
<li>Christopher Bystroff</li>
|
||
|
|
</ul>
|
||
|
|
<span class="course-capacity">
|
||
|
|
Seats Taken: 7/30
|
||
|
|
</span>
|
||
|
|
</div>
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2014</th>
|
||
|
|
<td class="term spring offered">
|
||
|
|
<div class="view-container detail-view-container">
|
||
|
|
<span class="term-course-info">
|
||
|
|
<a href="https://sis.rpi.edu/rss/bwckctlg.p_disp_listcrse?term_in=201401&subj_in=BCBP&crse_in=4550&schd_in=">Molecular Modeling (4c)</a>
|
||
|
|
</span>
|
||
|
|
<ul class="prof-list">
|
||
|
|
<li>Chunyu Wang</li>
|
||
|
|
<li>Christopher Bystroff</li>
|
||
|
|
</ul>
|
||
|
|
<span class="course-capacity">
|
||
|
|
Seats Taken: 2/30
|
||
|
|
</span>
|
||
|
|
</div>
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2013</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2012</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2011</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2010</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2009</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2008</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2007</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2006</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2005</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2004</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2003</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2002</th>
|
||
|
|
<td class="term spring not-offered">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2001</th>
|
||
|
|
<td class="term spring offered-diff-code">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">2000</th>
|
||
|
|
<td class="term spring not-offered">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">1999</th>
|
||
|
|
<td class="term spring not-offered">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
<tr>
|
||
|
|
<th class="year">1998</th>
|
||
|
|
<td class="term spring unscheduled">
|
||
|
|
</td>
|
||
|
|
<td colspan="2" class="term summer not-offered">
|
||
|
|
</td>
|
||
|
|
<td class="term fall not-offered">
|
||
|
|
</td>
|
||
|
|
</tr>
|
||
|
|
</tbody>
|
||
|
|
</table>
|
||
|
|
</div>
|
||
|
|
</div>
|
||
|
|
</body>
|
||
|
|
</html>
|